Python API Reference

Auto-generated reference for the pygenogrove extension module, built directly from the binding docstrings and signatures. For tutorials, worked examples, and the conceptual model, see the Python tabs throughout the User Guide.

Note

These pages are generated by autodoc and therefore require pygenogrove to be installed in the documentation build environment (pip install pygenogrove). A C+±only docs build omits this section.

• Coordinates & key types
  • GenomicCoordinate
  • Numeric
  • Kmer
• Grove
  • Groves
  • Grove views (partial random-access readers)
  • Keys
  • Query and flanking results
• Typed groves (BED / GFF)
  • Groves
  • Grove views (partial random-access readers)
  • Keys and results
  • Record types
• File readers and I/O
  • Readers
  • Record types
  • Alignment flags
  • Format detection
• Registry
  • Registry