API Reference

Genogrove provides libraries for multiple programming languages:

Languages

• C++ API Reference
  • Structure
  • Data Types
  • I/O
  • Structure
  • Data Types
  • I/O
• Python API Reference
  • Coordinates & key types
  • Grove
  • Typed groves (BED / GFF)
  • File readers and I/O
  • Registry
• Rust API Reference
  • Coming Soon
• R API Reference
  • Coming Soon

C++ Library

The core C++ library provides high-performance genomic data structures and I/O utilities.

C++ API Reference

Python Library

pygenogrove — Python bindings for the C++ library: the strand-aware GenomicCoordinate key plus the Numeric / Kmer point keys, a universal JSON-payload Grove (and NumericGrove / KmerGrove), typed BED/GFF groves, a graph overlay with SIF export, the JSON-payload Registry, and file readers (BED/GFF/BAM/VCF/FASTA). Generated by autodoc from the installed module.

Python API Reference

Rust Library

Rust implementation (coming soon).

Rust API Reference

R Library

R bindings for genomic analysis (coming soon).

R API Reference